| Shuttle Name | Mothership & Number | Type | Note |
|---|---|---|---|
| Shuttlecraft Argo | NCC-1701-E (no known number) | Type-13 shuttlecraft? | Landed on Kolarus in 2379 |
| Baxial | NCC-74656 (no known number) | Talaxian shuttle | Detached back to Neelix |
| Shuttlepod Campbell | Type-15 shuttlepod | ||
| Shuttlecraft Chaffee | NX-74205 #1 | Type-10 shuttlecraft | |
| Shuttlecraft Cochrane | NCC-74656 #4 | Type-9 shuttlecraft | Destroyed |
| Shuttlecraft Columbus | NCC-1701 #2 | ||
| Shuttlecraft Copernicus | NCC-1701 #3 | ||
| Shuttlecraft Copernicus | NCC-1701-A #3 | Type-3 shuttlecraft? | Destroyed |
| Shuttlepod Cousteau | Type-15 shuttlepod | Destroyed | |
| Cousteau | NCC-1701-E (no known number) | captain's yacht | Fought Son'a at the Ba'ku world |
| Shuttlecraft Curie | #03 | Type-6 shuttlecraft | Missing |
| Shuttlecraft Dawkins | Type-9 shuttlecraft | Active | |
| Delta Flyer | -- | Destroyed | |
| Delta Flyer II | -- | Active | |
| Shuttlecraft Drake | Type-8 shuttlecraft | Destroyed | |
| Shuttlepod El-Baz | #05 | Type-15 shuttlepod | Active |
| Shuttlecraft Fermi | #09 | Type-6 shuttlecraft | Destroyed |
| Shuttlecraft Feynman | Type-6 shuttlecraft | Active | |
| Shuttlecraft Galileo | NCC-1701/7 | Unknown class (TOS) | Destroyed |
| Shuttlecraft Galileo II | NCC-1701/7 | Unknown class (TOS) | Active |
| Shuttlecraft Galileo | #5 | Type-3 shuttlecraft | Destroyed |
| Shuttlecraft Galileo | #07 | Type-6 shuttlecraft | Active |
| Shuttlecraft Galileo | Type-11 shuttlecraft | Active | |
| Shuttlecraft Goddard | #15 | Type-6 shuttlecraft | Active |
| Shuttlecraft Hawking | #10 | Type-7 shuttlecraft | Active |
| Shuttlecraft Hawking | #15 | Type-5 shuttlecraft | Active |
| Shuttlecraft Justman | #03 | Type-6 shuttlecraft | Active |
| Shuttlecraft Kotoi | NCC-67016 #07 | Type-7 shuttlecraft | Destroyed at Wolf 359 |
| Shuttlecraft Laika | Orders transmitted in 2272 | ||
| Shuttlecraft Magellan | #15 | Type-6 shuttlecraft | Destroyed |
| Shuttlepod Onizuka | #07 | Type-15 shuttlepod | Active |
| Shuttlepod Pike | #12 | Type-15 shuttlepod | Destroyed |
| Pod 05 | #05 | Travel pod | Active |
| Shuttlecraft Sacajawea | #05 | Type-6 shuttlecraft | Active |
| Shuttlecraft Sakharov | #01 | Type-7 shuttlecraft | Active |
| SD-103 | Unknown class | Active | |
| Shuttlecraft Shuttle 1 | NCC-K7/1 | Unknown class (TOS) | Active |
| Shuttlecraft D'Alison | #10 | Type-7 shuttlecraft | Active |
| Shuttlecraft 13 | #13 | Type-7 shuttlecraft | Destroyed |
| Shuttlecraft 4 | #04 | Type-6 shuttlecraft | Active |
| Shuttlecraft 5 | #05 | Type-7 shuttlecraft | Active |
| Shuttlecraft 6 | #06 | Type-7 shuttlecraft | Destroyed |
| Shuttlepod 01 | #01 | Type-18 shuttlepod | Active |
| Shuttlepod Ley | #09 | Type-15 shuttlepod | Active |
| Shuttlecraft Surak | V8-5047-61192259584-5 | Warp sled | Active |
| Shuttlecraft Tereshkova | #01 | Type-8 shuttlecraft | Active |
| Shuttlecraft Verne | RS-47 | Type-6 shuttlecraft | Active |
| Shuttlecraft Voltaire | #03 | Type-15 shuttlepod | Destroyed |
| Alice | Unknown Class | Destroyed | |
| Taris Murn | Toron-class | Destroyed | |
| Shuttlecraft Copernicus | #03 | Type-7 shuttlecraft | Active |
| Shuttlecraft Copernicus | NCC-1701/10 | Unknown class (TAS) | Active |
| Shuttlecraft Shuttlecraft 12 | NCC-1701/12 | Unknown class (TAS) | Destroyed |
| Shuttlecraft Shuttlecraft 4 | NCC-1701/4 | Heavy Shuttle (TAS) | Active |
| (no known name) | NCC-71325 (no known number) | Type-8 shuttlecraft | Carried Tom Paris to DS9 |
| Shuttlecraft 4 | SC-4 | Type-15 shuttlecraft | Destroyed |
| Shuttlecraft Laika | Orders transmitted in 2272 |
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